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Publications

Novak WRP, West KHJ, Kirkman LMD, Brandt GS. Re-refinement of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase provides a clearer picture of an important malarial drug target. Acta Cryst. F Struct Biol Commun. 2018 Oct 3; F74(Pt 10):664-668.

Novak W.R.P. (2018) Tertiary Structure Domains, Folds and Motifs. In: Wells R.D., Bond J.S., Klinman J., Masters B.S.S. (eds) Molecular Life Sciences. Springer, New York, NY.

Novak WR, Bhattacharyya B, Grilley DP, Weaver TM. Proteolysis of truncated hemolysin A yields a stable dimerization interface. Acta Crystallogr F Struct Biol Commun. 2017 Mar 1;73(Pt 3):138-145.

Taylor ATS, Olofson EL, Novak WRP. Enhancing student retention of prerequisite knowledge through pre-class activities and in-class reinforcement. Biochem Mol Biol Educ. 2017 Mar 4;45(2):97-104. doi: 10.1002/bmb.20992.

Dries DR, Dean DM, Listenberger LL, Novak WRP, Franzen MA, Craig PA. An expanded framework for biomolecular visualization in the classroom: Learning goals and competencies. Biochem Mol Biol Educ. 2017 Jan-Feb; 45(1): 69–75.

Drury SAM, Stucker K, Douglas A, Rush RA, Novak WRP, Wysocki, LM. Using a Deliberation of Energy Policy as an Educational Tool in a Nonmajors Chemistry Course. J Chem Educ. 2016 Nov;93(11):1879-1885.

Wimmer MR, Woods CN, Adamczak KJ, Glasgow EM, Novak WR, Grilley DP, Weaver TM. Sequential unfolding of the hemolysin two-partner secretion domain from Proteus mirabilis. Protein Sci. 2015 Nov;24(11):1841-55.

Brodkin HR, DeLateur NA, Somarowthu S, Mills CL, Novak WR, Beuning PJ, Ringe D, Ondrechen MJ. Prediction of distal residue participation in enzyme catalysis. Protein Sci. 2015 May;24(5):762-78.

Granger JB, Lu Z, Ferguson JB, Santa Maria PJ, Novak WRP. Cloning, expression, purification and characterization of an iron-dependent regulator protein from Thermobifida fusca. Protein Expression and Purification. 2013 Sep 29;92(2):190-194.

Andrews FH, Tom AR, Gunderman PR, Novak WRP, McLeish MJ. A bulky hydrophobic residue is not required to maintain the v-conformation of enzyme-bound thiamin diphosphate. Biochemistry. 2013 May 7;52(18):3028-30.

Brodkin H, Novak WRP, Milne A, D'Aquino JA, Karabacak N, Agar J, Payne M, Petsko GA, Ondrechen MJ, Ringe D. Evidence for Participation of Remote Residues in the Catalytic Activity of Co-type Nitrile Hydratase from Pseudomonas putida. Biochemistry, 2011. 50(22):4923-4935.

Lazar L, Fisher SZ, Moulin A, Kovalevsky A, Novak W, Langan P, Petsko G, Ringe D. Time-of-flight neutron diffraction study of bovine gamma-chymotrypsin at the Protein Crystallography Station. Acta Crystallographica F, 2011 67:587-590.

Novak WRP, Moulin AG, Blakeley MP, Schlichting I, Petsko GA, Ringe D. A preliminary neutron diffraction study of γ-chymotrypsin. Acta Crystallographica F, 2009. 65:317-320.

Akana J, Fedorov AA, Fedorov E, Novak WR, Babbitt PC, Almo SC, Gerlt JA. D-Ribulose 5-phosphate 3-epimerase: functional and structural relationships to members of the ribulose-phosphate binding (beta/alpha)8-barrel superfamily. Biochemistry, 2006. 45(8):2493-503.

Novak WRP. Review of The Internet for Molecular Biologists: A Practical Approach. Sansom, C. and Horton, R., Eds. Brief. Bioinform. 2005(6): 208-209.

Copley SD, Novak WRP, Babbitt PC. Divergence of Function in the Thioredoxin-Fold Suprafamily: Evidence for Evolution of Peroxiredoxins from a Thioredoxin-like Ancestor. Biochemistry, 2004. 43(44):13981-95.

Novak WRP, Wang P-F, McLeish MJ, Kenyon GL, Babbitt PC. Isoleucine 69 and Valine 325 Form a Specificity Pocket in Human Muscle Creatine Kinase. Biochemistry, 2004. 43(43):13766-74.

Pegg, SC-H, Novak WRP, Babbitt PC. Intersect: Identification and visualization of overlaps in database search results. Bioinformatics, 2003. 19(15):1997-9.

Wang, P-F, Novak WRP, Cantwell JS, Babbitt PC, McLeish MJ, Kenyon GL, Expression of Torpedo californica Creatine Kinase in Escherichia coli and Purification from Inclusion Bodies. Protein Expression and Purification, 2002. 26(1):89-95.

Cantwell, JS, Novak WR, Wang P-F, McLeish MJ, Kenyon GL, Babbitt PC, Mutagenesis of two acidic active site residues in human muscle creatine kinase: implications for the catalytic mechanism. Biochemistry, 2001. 40(10):3056-61.

Huang CC, Novak WR, Babbitt PC, Jewett AI, Ferrin TE, Klein TE, Integrated tools for structural and sequence alignment and analysis. Pacific Symposium on Biocomputing, 2000:230-41.


 

 
   
date last modified: 2019-03-21      webmaster: Walter Novak