Curriculum Vitae
Dr. Scott E. Feller
Department of Chemistry
301
Crawfordsville IN 47933
office (765) 361-6175
home (765) 364-0780
fax (765) 361-6149
e-mail fellers@wabash.edu
EDUCATION
Ph.D.,
Physical Chemistry,
B.A., Major: Chemistry, Minor:
Mathematics,
TEACHING
EXPERIENCE
Associate
Professor of Chemistry, Wabash College, 2003-present.
Assistant Professor of
Chemistry, Wabash College, 1998-2003, Introductory Chemistry with
Laboratory, Quantitative Chemistry with Laboratory, Physical Chemistry with
Laboratory, Cultures and Traditions (all College, great books type course), Descriptive
Chemistry with Laboratory, Non-majors Chemistry with Laboratory, Student
Research Advisor.
Visiting Assistant Professor, Whitman College, 1996-1998,
Introductory Chemistry with laboratory, Molecular Modeling, Chaos &
Scientific Computing, Intro Chem Lab coordinator,
Student Research Advisor.
Teaching Assistant,
RESEARCH
EXPERIENCE
Principal
Investigator,
Department of Chemistry,
Principal
Investigator,
Department of Chemistry,
Staff
Fellow,
Center for Biologics Evaluation & Research (FDA laboratory at the National
Institutes of Health), 2/94-8/96.
Supervisor: Dr Richard Pastor,
Biophysics Laboratory.
Visiting Researcher,
Graduate
Study, UCDavis, 1/90-12/93.
Supervisor: Dr. D.A. McQuarrie, Department of Chemistry.
Visiting
Researcher,
Universidad Autonoma Metropolitina-Iztapalapa
(
Research
Assistant,
GRANTS AND
FELLOWSHIPS
Henry Dreyfus
Teacher-Scholar Award.
Title: Computational studies of
lipid-protein interactions. Amount $60,000. Period 2003-2008.
National Science Foundation, special grants
program. Title: Examining student outcomes associated with undergraduate
research participation at
National Science Foundation, CAREER award.
Title: Use of atomic-level models to study lipid bilayer
membranes and to enhance undergraduate teaching. Amount: $500,000. Period:
2001-2006.
National Science Foundation,
CCLI program. Title: Molecular Modeling Throughout
the Chemistry Curriculum. Amount:
$36,874. Period: 2000-2002.
Byron K. Trippet summer research award,
National
Science Foundation travel award to attend CECAM conference in
National
Science Foundation, Research in Undergraduate Institutions program. Title:
Molecular Dynamics Simulations of Lipid Bilayer
Membranes. Amount: $156,418.
Period: 1998-2001.
Food and
Drug Administration, Office of Vaccine Research & Review. Title:
Computer Modelling of Varicella
(chicken pox). Amount: $19,768.
Period: 1997.
Bradford Borge Graduate Fellowship,
PROFESSIONAL
AFFILIATIONS
American Chemical Society
Council on Undergraduate
Research
Biophysical Society
PROFESSIONAL
SERVICE
Reviewer for: Biophysical Journal, Journal of Chemical Physics, Journal of Physical Chemistry, Journal of the American Chemical Society, Physical Chemistry Chemical Physics, Journal of Molecular Biology, Journal of Computational Physics, Langmuir, Chemistry and Physics of Lipids, European Biophysical Journal, and Journal of Chemical Education.
Review panel member:
Molecular Biophysics section National Science Foundation; Course, Curriculum,
and Laboratory Improvement section National Science Foundation; Department of
Energy;
Campus Liason:
Council on Undergraduate Research.
HONORS AND
AWARDS
Scientific Achievement award
for top research group (1 of 3 members), Food & Drug Administration; Center Director’s
award for Scientific Achievement, Center
for Biologics Evaluation & Research/FDA, 1996.
Award for Outstanding
Accomplishments in Graduate Program, UCDavis, 1991
Award for Excellence in
Undergraduate Chemical Research, given by
Henry Dreyfuss Teacher Scholar, 2003-2008.
UNDERGRADUATE
RESEARCH STUDENTS
Olivia Uitto
– PhD student,
Roger Armen
– PhD student,
Matthew Schneider – computer
programmer, Cincinatti OH
Matthew Kriech
– PhD student,
Robert Dirks – PhD student,
Cal Tech
Chris Brown – M.D. student,
Matthew Strader
– PhD student,
Adam Moser – PhD student,
Damon Carl – PhD student,
Joe Scanlon – PhD student,
John Dustman – current
Jesse Ward – PhD student,
Galen Collins – PhD student,
INVITED PRESENTATIONS
"Variational Solutions
to Integral Equation Theories of the Electrical Double Layer", 1994
National ACS meeting,
"Surface
Tension-Area Isotherms of a DPPC Bilayer and
Monolayer from Molecular Dynamics Computer Simulations", 1995 National ACS
meeting,
"Time Scales of Lipid
Dynamics", 1996 Gordon Conference on Chemistry at Interfaces,
"Interpretation of NOESY
Cross-Relaxation Rates from Molecular Dynamics Simulation of a Lipid Bilayers", 1999 CECAM Conference on Lipid Bilayer Membranes and Membrane Associated Proteins,
"Building a Supercomputer
for Computational Chemistry", 1999 Consortium of Liberal Arts Colleges
(CLAC) annual meeting,
"Interpretation
of NOESY Cross-Relaxation Rates from Molecular Dynamics Simulation of a Lipid Bilayers", 2000 International Bunsen Discussion
meeting on interactions of biopolymers with model membranes,
"Lipid Dynamics from
Simulation and Experiment", 2000 FASEB meeting on membrane biophysics,
Saxon’s
"New
Insights into Biomembrane Structure from
Two-Dimensional Overhauser Enhancement Spectroscopy –
MD Simulations", 2001 Mesilla Workshop on the Structure and Dynamics of Biomembranes,
“Molecular Dynamics
Simulations of Saturated and Polyunsaturated Lipid Bilayer
Membranes”, 2002 International Society for the Study of Fatty Acids and Lipids,
“Polyunsaturated
Lipid Bilayer Membranes: Insights from Molecular
Dynamics Computer Simulations”, 2003
“Insights
into Polyunsaturated Lipids from Molecular Dynamics Simulations”, 2004
Biophysical Society Annual Meeting.
“Understanding the unique
properties of polyunsaturated lipids”, Biological Membranes: Emerging
Challenges at the Interface between Theory, Computer Simulation, and Experiment,
Departmental seminars: Purdue
University, Illinois Institute of Technology, Indiana University, Notre Dame
University, Michigan State University, Indiana University Purdue University
Indianapolis, National Institute of Alcohol Abuse and Alcoholism, Miami
University of Ohio, University of Illinois, IBM Yorktown Heights, University of
Chicago, University of Leipzig (Germany), University of North
Carolina-Greensboro, Yokohama City University (Japan), University of Kentucky,
Washington University.
POSTER PRESENTATIONS AND CONTRIBUTED TALKS (*denotes undergraduate
co-authors)
D. Huster,
S.E. Feller and K. Gawrisch, "NOESY NMR Crosspeaks Between Lipid Headgroups
and Hydrocarbon Chains: Spin Diffusion or Molecular Disorder?",
1999 Biophysical Society Annual Meeting,
C.A Brown*
and S.E. Feller, "Molecular Dynamics Simulations of Ethanol in a Lipid Bilayer", 2000 American Chemical Society –
K. Gawrisch,
S.E. Feller, N.V. Eldho, and A.M. Safley,
"Conformation and Flexibility of the Polyunsaturated Docosahexaenoic
Acid Chain", 2001 Biophysical Society Annual Meeting,
D.T. Nizza, Christopher A. Brown*, S.E. Feller, and K. Gawrisch, "NMR Measurements and MD Simulations of
Ethanol-membrane Interactions", 2001 Biophysical Society Annual Meeting,
C.A Brown*
and S.E. Feller, "Molecular Dynamics Simulations of Ethanol in a Lipid Bilayer", 2001 National Conference on Undergraduate
Research,
S.E. Feller, R.F. Dallinger, and P.C. McKinney, “Integrating Molecular Modeling Into the General
Chemistry Course”, 2001 National ACS fall meeting,
D.R. Carl* and S.E. Feller, “Molecular dynamics simulations of
liquid/liquid interfaces: An in depth look at water/octane”, 2001
American Chemical Society –
A. Moser* and S.E. Feller, “Molecular Modeling of Lipid Bilayer Membranes”, 2001 American Chemical Society –
M.L. Strader*
and S.E. Feller, “A Flexible All-atom
Model of Dimethylsulfoxide for Molecular Dynamics
Simulations”, 2001 American Chemical Society –
A. Beselman,
S.E. Feller, and A.D. MacKerell Jr,
“Quantum mechanical study of the intrinsic energetics
of the glycerol phosphate linker region of phospholipids”, 2002 Biophysical
Society Annual Meeting, Boston MA.
D.R. Carl*
and S.E. Feller, “Calculating Free Energies of Transferring a Single Water
Molecule Through Bulk Layers of Sixteen-Carbon
Chains: A Study of Increasing Levels of Unsaturation in Hexadecane Molecules”, 2002 American
Chemical Society –
J. Dustman* and S.E. Feller, “Calculating
Viscosities and Related Properties of Alkanes and
Alcohols from Molecular Dynamics Simulations”, 2002 American Chemical Society –
J.D.
Scanlon* and S.E. Feller, “Molecular Dynamics Simulations of Humna N-RAS Protein in a Dimyristoylphosphatidylcholine
(DMPC) bilayer”, 2002 American Chemical Society –
S.E. Feller and T.B. Woolf, “Polyunsaturation
Effects on Protein:Lipid
Interactions: Molecular Dynamics Simulations of Rhodopsin
in an Explicit DHA Bilayer”, 2003 Biophysical
Society Annual Meeting,
S.E. Feller,
K. Gawrisch and A.D. MacKerell,
Jr., “Structural and Dynamic Properties of Polyunsaturated Fatty Acids from
Simulation and Experiment”, 2003 Biophysical Society Annual Meeting,
N.V. Eldho,
S.E. Feller, S. Tristram-Nagle, I.V. Polozov, K. Gawrisch,
“Polyunsaturated Docosahexaenoic vs. Docosapentaenoic Acid – Differences in Lipid Matrix
Properties from the Loss of One Double Bond”, 2003 Biophysical Society Annual
Meeting, San Antonio TX.
D.R. Carl* and S.E. Feller, “Calculating
Free Energies of Transferring a Single Water Molecule Through Bulk Layers of
Sixteen-Carbon Chains: A Study of
Increasing Levels of Unsaturation in Hexadecane
Molecules”, National Conference for Undergraduate Research,
J. Dustman* and S.E. Feller, “A Computational Study of Viscosity in the
Lipid Bilayer”, 2003 American Chemical Society
–
J. Ward* and S.E. Feller, “The
Effects of Trans-Fatty Acids on Lipid Membranes”, 2003 American Chemical
Society –
S.P. Soni, J. Ward*, S.E. Feller, S.R. Wassall,
“Molecular Organization in a Trans Unsaturated Membrane”, 2004 Biophysical
Society Annual Meeting,
J. Dustman*, H.C. Gaede, K. Gawrisch, S.E. Feller,
“Interaction of a Series of Aromatic Solutes with a Phospholipid
Bilayer”, 2004 Biophysical Society Annual Meeting,
Y. Liu, N. Kucerka,
N. Chu, S. Tristram-Nagle,
H.I. Petrache, S.E. Feller, J.F. Nagle, “Structure
and Interactions of Biomembranes Using Diffuse X-ray
Scattering on Fully Hydrated Oriented Systems ”, 2004 Biophysical Society
Annual Meeting,
S.E. Feller,
M.C. Pitman, “A Molecular Dynamics Study of the Interaction of Cholesterol with
Saturated and Polyunsaturated Fatty Acids in a Phosphatidylcholine
Lipid Bilayer”, 2004 Biophysical Society Annual
Meeting,
M.C. Pitman, S.E. Feller, “Structure
and dynamics of 1-stearoyl-2-oleoyl-phosphatidyethanolamine (SOPE) by molecular
simulation reveals notable differences compared to
1-palmitoyl-2-oleoyl-phosphatidylcholine (POPC) due to head group hydrogen
bonding in SOPE”, 2004 Biophysical Society Annual Meeting,
N. Kucerka,
J.F. Nagle, S.E. Feller, P. Balgavy, “Advanced Models
to Obtain Structural Information from Neutron Scattering on LUVs”,
2004 Biophysical Society Annual Meeting,
J. Ward* and S.E. Feller, “The
Effects of Trans-Fatty Acids on Lipid Membranes”, 2004 National Conference on
Undergraduate Research,
S.P. Soni, J. Ward*, S.E. Feller, S.R. Wassall,
“Molecular Organization in a Trans Unsaturated Membrane”, 2004 Central Regional
Meeting of the American Chemical Society.
S.E. Feller, M.C. Pitman, “A Molecular Dynamics Study
of the Interaction of Cholesterol with Saturated and Polyunsaturated Fatty
Acids in a Phosphatidylcholine Lipid Bilayer”, 2004 Biophysical Discussions meeting, Asilomar, CA.
S.E. Feller, M.C. Pitman, F. Suits, “A Molecular
Dynamics Study of the Interaction of Cholesterol with Saturated and
Polyunsaturated Fatty Acids in a Phosphatidylcholine
Lipid Bilayer”, 2005 Biophysical Society
Annual Meeting, Long Beach CA.
M.C. Pitman, F. Suits, A. Grossfield,
S.E. Feller, “Molecular
Dynamics Investigation of Dark-Adapted Rhodopsin in
an explicit 2:2:1 SDPE/SDPC/Cholesterol Environment: Membrane Structure and
Dynamics”, 2005 Biophysical Society Annual Meeting, Long Beach CA.
A. Grossfield, M.C. Pitman,
F. Suits, S.E. Feller, “Molecular
Dynamics Investigation of Dark-Adapted Rhodopsin in
an explicit 2:2:1 SDPE/SDPC/Cholesterol Environment: Protein Structure and
Dynamics”, 2005 Biophysical Society Annual Meeting, Long Beach CA.
M. Carrillo-Tripp, S.E. Feller, “Lateral
Pressure Distribution of Mono and Polyunsaturated Acid Containing Lipid
Membranes”, 2005 Biophysical Society Annual Meeting,
S.E. Feller, A. Vogel, H. Waldmann,
K. Arnold, D. Huster, “Molecular Dynamics Simulation of a Lipidated Ras Peptide in
Membranes”, 2005 Biophysical Society Annual Meeting, Long Beach CA.
PUBLICATIONS (* denotes undergraduate co-authors)
1. A.D. Payton and S.E. Feller, "The
Absolute Value of the Standard Partial Molar Entropy of the Hydrogen Ion in
Aqueous Solution at 25C", J.
Electro. Chem.
Soc. 137,
183 (1990).
2. A.D. Payton, T.R. Eubanks, S.E. Feller and
T.G. O'Donnell, "A Further Comparison of Theoretical and Experimental
Limiting Slopes for the Concentration Dependence of Thermoelectric Powers in
Aqueous Hydrochloric Acid at 25 and 15C", J. Electro. Chem. Soc. 137, 1028 (1990).
3. J.E. Curry, S.E. Feller and D.A. McQuarrie, "A Variational
Solution of the Nonlinear Poisson-Boltzmann Equation
Inside a Spherical Cavity", J.
Colloid Interface Sci. 143, 527 (1991).
4. S.E. Feller and D.A. McQuarrie,
"A Variational Solution to the Hypernetted Chain Equation Applied to the Electrical Double
Layer", J. Phys. Chem. 96, 3454 (1992).
5. L. Yeomans, S.E.
Feller, E. Sanchez and M. Lozada-Cassou, "The
Structure of Electrolytes in
Cylindrical Pores", J.
Chem. Phys. 98, 1436 (1993).
6. S.E. Feller and D.A. McQuarrie,
"Calculation of the Force Between Planar Electrical Double Layers
Containing Counterion Mixtures", Mol. Phys. 80, 721 (1993).
7. S.E. Feller and D.A. McQuarrie,
"Ion Distribution and Force Between Two
Charged Plates: A Variational
Solution of the Three Point Extension Hypernetted
Chain Equations",
J. Colloid Interface Sci.
162, 208 (1994).
8. S.E. Feller and D.A. McQuarrie,
"Ionic Size Effects on the Force Between Planar Electrical Double Layers", J. Phys. Chem. 97, 12083 (1993).
9. J.A. Greathouse,
S.E. Feller and D.A. McQuarrie, "The Modified Gouy-Chapman Theory:
Comparison Between Electrical Double Layer
Models of Clay Swelling", Langmuir, 10,
2125 (1994).
10. S.E. Feller, Y. Zhang, R.W. Pastor and
11. R.W. Pastor and S.E. Feller, "Time
Scales of Lipid Dynamics and Molecular Dynamics", in Membrane Structure and Dynamics, K.M. Merz
and B. Roux (Eds.), Birkhauser, Boston, (1996).
12. Y. Zhang, S.E. Feller,
13. S.E. Feller, Y. Zhang and R.W. Pastor,
"Computer Simulation of Liquid Interfaces II: Surface Tension-Area
Dependence of a Bilayer and Monolayer", J. Chem. Phys., 103, 10267 (1995).
14. N. Tjandra, S.E.
Feller, R.W. Pastor and A. Bax, "Rotational
Diffusion Anisotropy of Human Ubiquitin from 15N
NMR Relaxation", J. Amer. Chem. Soc.,
117, 12562 (1995).
15. S.E. Feller and R.W. Pastor, "On
Simulating Lipid Bilayers with an Applied Surface
Tension: Periodic Boundary Conditions
and Undulations", Biophys. J., 71, 1350
(1996).
16. S.E. Feller, R.W. Pastor, A. Rojnuckarin,
17. S.E. Feller and R.W. Pastor, “Length Scales
of Lipid Dynamics and Molecular Dynamics”, in Proceedings of the Pacific Symposium on Biocomputing. R.B. Altman, A.K. Dunker, L. Hunter, T.E.
Klein, Eds. World
Scientific,
18. S.E. Feller, D. Yin, R.W. Pastor and A. MacKerrell, Jr., “Molecular Dynamics Simulation of
Unsaturated Lipids at How Hydration: Paramterization and Comparison with Diffraction Studies”, Biophysical J., 73, 2269-2279 (1997).
19. S.E. Feller, R.M. Venable and R.W. Pastor,
“Computer Simulation of a DPPC Phospholipid Bilayer: Structural
Changes as a Function of Molecular Surface Area”, Langmuir, 13, 6555-6561 (1997).
20. H.I Petrache, S.E.
Feller and J.F. Nagle, “Partial Volumes from MD Simulations”, Biophysical J., 72, 2237-2241 (1997).
21. R.S. Armen*, O.D. Uitto* and S.E. Feller, “Phospholipid
Component Volumes. I. Determination and Application to
Diffraction Refinement Methods”, Biophysical
J., 75, 734-744 (1998).
22. S.E. Feller and R.W. Pastor, “Constant
Surface Tension Simulations of Lipid Bilayers: the
Sensitivity of Surface Areas and Compressibilities”, J. Chem. Phys., 111,1281-1287 (1999).
23. S.E. Feller, D. Huster
and K. Gawrisch, "Interpretation of NOESY
Cross-relaxation Rates from Molecular Dynamics Simulation of a Lipid Bilayer", J.
Amer. Chem. Soc., 121, 8963-8964
(1999).
24. S.E. Feller and A.D. MacKerell,
Jr., “An Improved Empirical Potential Energy Function for Molecular Simulations
of Phospholipids”, J. Phys. Chem. B, 104, 7510-7515 (2000).
25. S.E. Feller, “Molecular Dynamics Simulations
of Lipid Bilayers”, J. Curr Opin. Coll. Int. Sci., 5, 217-223 (2000).
26. S.E. Feller and C.F. Blaich, “Error Estimates for Fitted Parameters: Application
to HCl/DCl Vibrational-Rotational
Spectroscopy”, J. Chem. Ed., 77,
409-412 (2001).
27. S.E. Feller,
"Molecular Dynamics Simulation of Phospholipid Bilayers" in
Lipid Bilayers, John Katsaras
and Thomas Gutberlet (Eds.), Springer, 2000:89-107.
28. M.J.
Schneider* and S.E. Feller, “Molecular Dynamics Simulations of a Phospholipid Detergent Mixture”, J. Phys. Chem., 105, 1331-1337
(2001).
29. S.E. Feller, K. Gawrisch and A.D. MacKerell, Jr.,
“Polyunsaturated Fatty Acids in Lipid Bilayers:
Intrinsic and Environmental Contributions to Their Unique Physical Properties”,
J. Amer. Chem. Soc., 124, 318-326 (2002).
30. S.E.
Feller, C.A. Brown*, D.T. Nizza and K. Gawrisch, “NOESY cross-relaxation rates and ethanol
distribution across membranes”, Biophys. J., 82, 1396-1404 (2002).
31. M.L. Strader* and S.E. Feller, “A Flexible All-atom Model of Dimethylsulfoxide for Molecular Dynamics Simulations”, J.
Phys. Chem. A, 106,
1074-1080 (2002).
32. A.T.S. Taylor and S.E.
Feller, “Structural Studies of Phycobiliproteins from Spirulina: Combining
Spectroscopy, Thermodynamics, and Molecular Modeling in an Undergraduate
Biochemistry Experiment”, J. Chem. Ed., 79, 1467 (2002).
33. R.W. Pastor, R.M. Venable and S.E.
Feller, “Lipid Bilayers, NMR Relaxation, and Computer
Simulations”, Acc. Chem. Res., 35, 438-446 (2002).
34. H.A. Stern and S.E. Feller, “Calculation of the
Dielectric Permitivitty Profile for a Nonuniform System: Application to a Lipid Bilayer Simulation”, J.
Chem. Phys., 118, 3401-3413 (2003).
35. S.E. Feller, K. Gawrisch,
and T.B. Woolf, “Rhodopsin Exhbits a Preference for Solvation
by Polyunsaturated Docosohexaenoic Acid”, J. Amer. Chem. Soc., 125, 4434-4435 (2003).
36. N.V. Eldho, S.E. Feller, S. Tristram-Nagle,
I.V. Polozov, K. Gawrisch,
“Polyunsaturated Docosahexaenoic
vs. Docosapentaenoic Acid – Differences in Lipid
Matrix Properties from the Loss of One Double Bond”, J. Amer. Chem. Soc., 125, 6409-6421 (2003).
37. D.R. Carl* and S.E. Feller, “Free Energy of Water Transfer into a Hydrophobic Medium: The Effect of Polyunsaturation”, Langmuir, 19, 8560-8564 (2003).
38. S.E. Feller, R.F. Dallinger, and P.C. McKinney, “A Program of Computational Chemistry Exercises for the First-Semester General Chemistry Course”, J. Chem. Ed., 81, 283-287 (2004).
39. N. Kurcerka, J.F Nagle, S.E. Feller and P. Balgavy, “Models to analyze small angle neutron scattering from unilamellar lipid vesicles”, Phys Rev E. 69, 051903 (2004).
40. C. Roach,
S.E. Feller, J.A. Ward*, S.R. Shaikh, M. Zerouga, and
41. Pitman, M.
C.; Suits, F.; MacKerell, A. D., Jr.; Feller, S. E.,
“Molecular-Level Organization of Saturated and
Polyunsaturated Fatty Acids in a Phosphatidylcholine Bilayer Containing Cholesterol”, Biochemistry 43, 15318-15328 (2004).
42. Pitman, M.
C.; Grossfield, A.; Suits, F.; Feller, S. E., “Role
of cholesterol and polyunsaturated chains in lipid-protein interactions:
Molecular dynamics simulation of rhodopsin in a
realistic membrane environment”, J. Am.
Chem. Soc 127:4576-4577 (2005).
43. Suits, F.;
Pitman, M. C.; Feller, S. E., “Molecular Dynamics Investigation of the
Structural Properties of Phosphatidylethanolamine
Lipid Bilayers”, J.
Chem. Phys. ,
in press (2005).
44. Pitman, M.
C.; Suits, F.; Gawrisch, K.; Feller, S. E., “Molecular
Dynamics Investigation of the Dynamical Properties of Phosphatidylethanolamine
Lipid Bilayers”, J.
Chem. Phys. ,
in press (2005).
45. Feller,
S.E.; Gawrisch, K., “Properties of docosahexaenoic acid-containing lipids and their influence
on the function of the GPCR rhodopsin”, Curr. Opin. Struct. Bio.,
in press (2005).
46.
Carrillo-Tripp, M., Feller, S.E., “Evidence for a Mechanism by Which w-3 Polyunsaturated
Lipids May Affect Membrane Protein Function”, Biochemistry, in press (2005).